HL_1W2B_005

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUCGCG

Length

7 nucleotides

Bulged bases

1W2B|1|0|U|138, 1W2B|1|0|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_005 not in the Motif Atlas

Homologous match to HL_4V9F_005

Geometric discrepancy: 0.1099

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1W2B|1|0|C|136
1W2B|1|0|U|137
1W2B|1|0|U|138
1W2B|1|0|C|139
1W2B|1|0|G|140
1W2B|1|0|C|141
1W2B|1|0|G|142

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15E