Motif HL_13184.2 Version HL_13184.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_005 | 4V9F | 0.4624 | 2 | 0 | LSU rRNA | C | 136 | U | 137 | C | 139 | G | 140 | G | 142 | cWW | tSW | |
| 2 | HL_9AXU_012 | 9AXU | 0.3409 | 2 | 2 | LSU rRNA | C | 623 | U | 624 | C | 626 | G | 627 | G | 629 | cWW | tSW | |
| 3 | HL_8B0X_023 | 8B0X | 0.3030 | 2 | A | SSU rRNA | G | 1134 | U | 1135 | C | 1137 | G | 1138 | C | 1140 | cWW | tSW | |
| 4 | HL_8OI5_073 | 8OI5 | 0.0000 | 2 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | ||
| 5 | HL_9AXU_073 | 9AXU | 0.1427 | 2 | 4 | 5.8S rRNA | C | 116 | A | 117 | C | 118 | U | 120 | G | 122 | cWW | ||
| 6 | HL_8P9A_188 | 8P9A | 0.1392 | 2 | AT | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | ||
| 7 | HL_8GLP_080 | 8GLP | 0.1767 | 1 | L8 | 5.8S rRNA | C | 107 | A | 108 | C | 109 | U | 110 | G | 112 | cWW | ||
| 8 | HL_8B0X_066 | 8B0X | 0.2865 | 1 | UNCG (H) | a | LSU rRNA | C | 1535 | U | 1536 | C | 1538 | G | 1539 | G | 1540 | cWW | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 3 |
| CUUCGCG | 1 |
| CUUCGUG | 1 |
| GUCCGGC | 1 |
| CACUUG | 1 |
| CUACGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 3 |
| UUCGC | 1 |
| UUCGU | 1 |
| UCCGG | 1 |
| ACUU | 1 |
| UACG | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- UNCG (H) (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.28 | Max 0.53
Coloring options: