HL_1W2B_010

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

1W2B|1|0|C|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0859

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

1W2B|1|0|U|312
1W2B|1|0|U|313
1W2B|1|0|G|314
1W2B|1|0|G|315
1W2B|1|0|A|316
1W2B|1|0|A|317
1W2B|1|0|C|318
1W2B|1|0|A|319

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4P

Chain S

RIBOSOMAL PROTEIN L24

Chain X

50S RIBOSOMAL PROTEIN L32E