HL_1W2B_012

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

1W2B|1|0|G|336, 1W2B|1|0|A|337, 1W2B|1|0|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0815

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

1W2B|1|0|G|334
1W2B|1|0|U|335
1W2B|1|0|G|336
1W2B|1|0|A|337
1W2B|1|0|C|338
1W2B|1|0|A|339
1W2B|1|0|A|340
1W2B|1|0|C|341
1W2B|1|0|C|342

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4P

Chain S

RIBOSOMAL PROTEIN L24

Chain X

50S RIBOSOMAL PROTEIN L32E