HL_1W2B_024

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1W2B|1|0|U|840, 1W2B|1|0|A|844, 1W2B|1|0|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.0753

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

1W2B|1|0|U|837
1W2B|1|0|C|838
1W2B|1|0|C|839
1W2B|1|0|U|840
1W2B|1|0|A|841
1W2B|1|0|C|842
1W2B|1|0|A|843
1W2B|1|0|A|844
1W2B|1|0|U|845
1W2B|1|0|A|846

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain Q

50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22

Chain Z

RIBOSOMAL PROTEIN L37E