HL_1W2B_030

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1W2B|1|0|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.2193

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1W2B|1|0|C|1168
1W2B|1|0|U|1169
1W2B|1|0|U|1170
1W2B|1|0|A|1171
1W2B|1|0|G|1172
1W2B|1|0|A|1173
1W2B|1|0|A|1174
1W2B|1|0|G|1175
1W2B|1|0|C|1176
1W2B|1|0|A|1177
1W2B|1|0|G|1178

Current chains

Chain 0

23S RRNA

Nearby chains