HL_1W2B_059

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_059 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0777

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1W2B|1|0|U|2389
1W2B|1|0|U|2390
1W2B|1|0|C|2391
1W2B|1|0|C|2392
1W2B|1|0|C|2393
1W2B|1|0|A|2394
1W2B|1|0|A|2395
1W2B|1|0|C|2396
1W2B|1|0|G|2397
1W2B|1|0|A|2398
1W2B|1|0|G|2399

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E

Chain K

50S RIBOSOMAL PROTEIN L15P

Chain P

50S RIBOSOMAL PROTEIN L21E