HL_1W2B_064

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_064 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3896

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1W2B|1|0|G|2585
1W2B|1|0|U|2586
1W2B|1|0|U|2587
1W2B|1|0|G|2588
1W2B|1|0|U|2589
1W2B|1|0|U|2590
1W2B|1|0|C|2591
1W2B|1|0|G|2592
1W2B|1|0|C|2593

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain J

50S RIBOSOMAL PROTEIN L14P