HL_1W2B_068

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1W2B|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0757

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1W2B|1|0|C|2780
1W2B|1|0|U|2781
1W2B|1|0|G|2782
1W2B|1|0|A|2783
1W2B|1|0|A|2784
1W2B|1|0|C|2785
1W2B|1|0|G|2786
1W2B|1|0|C|2787
1W2B|1|0|A|2788
1W2B|1|0|U|2789
1W2B|1|0|C|2790
1W2B|1|0|U|2791
1W2B|1|0|A|2792
1W2B|1|0|A|2793
1W2B|1|0|G|2794

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6P

Chain I

50S RIBOSOMAL PROTEIN L13P