HL_1X8W_013

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1X8W_013 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1216

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1X8W|1|C|G|234
1X8W|1|C|G|235
1X8W|1|C|A|236
1X8W|1|C|G|237
1X8W|1|C|A|238
1X8W|1|C|C|240

Current chains

Chain C

Tetrahymena ribozyme RNA

Nearby chains

Chain B

Tetrahymena ribozyme RNA