1X8W Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1X8W_001 | 1/A/149:154 | GNRA | geometric HL_6CZR_091 HL_37824.3 | |
| HL_1X8W_002 | 1/A/166:174 | No text annotation | geometric HL_2R8S_002 HL_03333.1 | |
| HL_1X8W_003 | 1/A/234:240 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_1X8W_005 | 1/A/322:327 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_1X8W_006 | 1/B/149:154 | GNRA | geometric HL_1U9S_002 HL_37824.3 | |
| HL_1X8W_007 | 1/B/166:174 | No text annotation | geometric HL_2R8S_002 HL_03333.1 | |
| HL_1X8W_008 | 1/B/234:240 | GNRA | geometric HL_4LFB_027 HL_37824.3 | |
| HL_1X8W_009 | 1/B/285:293 | No text annotation | ||
| HL_1X8W_010 | 1/B/322:327 | GNRA | geometric HL_4ENC_002 HL_37824.3 | |
| HL_1X8W_011 | 1/C/149:154 | GNRA | geometric HL_1U6B_001 NA | |
| HL_1X8W_012 | 1/C/166:174 | No text annotation | geometric HL_2R8S_002 HL_03333.1 | |
| HL_1X8W_013 | 1/C/234:240 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_1X8W_015 | 1/C/322:327 | GNRA | geometric HL_5F9F_003 HL_37824.3 | |
| HL_1X8W_016 | 1/D/149:154 | GNRA | geometric HL_5UZ6_001 HL_37824.3 | |
| HL_1X8W_017 | 1/D/166:174 | No text annotation | geometric HL_1GID_005 HL_03333.1 | |
| HL_1X8W_018 | 1/D/234:240 | GNRA | geometric HL_1L9A_002 HL_37824.3 | |
| HL_1X8W_020 | 1/D/322:327 | GNRA | geometric HL_5FQ5_001 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1X8W_004 | No text annotation | ||
| HL_1X8W_014 | No text annotation | ||
| HL_1X8W_019 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1X8W_001 | 1/A/110:111, 1/A/209:211 | No text annotation | ||
| IL_1X8W_002 | 1/A/112:116, 1/A/205:208 | UAA/GAN variation | geometric IL_2R8S_002 IL_77691.4 | |
| IL_1X8W_003 | 1/A/121:127, 1/A/195:200 | Kink-turn related | geometric IL_2R8S_003 IL_07880.1 | |
| IL_1X8W_004 | 1/A/129:131, 1/A/192:193 | Minor groove platform | geometric IL_4R4V_001 IL_92540.1 | |
| IL_1X8W_005 | 1/A/134:136, 1/A/182:189 | cWH basepair with bulged bases | geometric IL_2R8S_005 IL_84365.1 | |
| IL_1X8W_006 | 1/A/216:220, 1/A/253:257 | UAA/GAN | geometric IL_7RQB_060 NA | |
| IL_1X8W_007 | 1/A/223:227, 1/A/247:250 | Receptor of 11-nt loop-receptor motif | geometric IL_3IGI_012 IL_67767.2 | |
| IL_1X8W_040 | 1/A/268:280, 1/A/298:307 | No text annotation | ||
| IL_1X8W_008 | 1/A/313:315, 1/A/406:413 | No text annotation | ||
| IL_1X8W_009 | 1/A/316:318, 1/A/331:405 | No text annotation | geometric IL_4V87_185 IL_09990.2 | |
| IL_1X8W_010 | 1/B/110:111, 1/B/209:211 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_1X8W_011 | 1/B/112:116, 1/B/205:208 | UAA/GAN variation | geometric IL_2R8S_002 IL_77691.4 | |
| IL_1X8W_012 | 1/B/121:127, 1/B/195:200 | Kink-turn related | geometric IL_2R8S_003 IL_07880.1 | |
| IL_1X8W_013 | 1/B/129:131, 1/B/192:193 | Single bulged U | geometric IL_6MWN_006 IL_89505.1 | |
| IL_1X8W_014 | 1/B/134:136, 1/B/182:189 | Isolated cWH basepair | geometric IL_4WZM_001 NA | |
| IL_1X8W_015 | 1/B/216:220, 1/B/253:257 | UAA/GAN | geometric IL_7RQB_060 NA | |
| IL_1X8W_016 | 1/B/223:227, 1/B/247:250 | Receptor of 11-nt loop-receptor motif | geometric IL_3IGI_012 IL_67767.2 | |
| IL_1X8W_017 | 1/B/262:264, 1/B/311:312 | Minor groove platform | geometric IL_1U6B_007 NA | |
| IL_1X8W_041 | 1/B/268:280, 1/B/298:307 | No text annotation | ||
| IL_1X8W_018 | 1/B/313:315, 1/B/406:413 | No text annotation | ||
| IL_1X8W_019 | 1/B/316:318, 1/B/331:405 | No text annotation | geometric IL_4N0T_004 IL_47767.1 | |
| IL_1X8W_020 | 1/C/110:111, 1/C/209:211 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_1X8W_045 | 1/C/112:116, 1/C/205:208 | No text annotation | ||
| IL_1X8W_022 | 1/C/121:127, 1/C/195:200 | No text annotation | ||
| IL_1X8W_023 | 1/C/129:131, 1/C/192:193 | Minor groove platform | geometric IL_7TZS_003 IL_92540.1 | |
| IL_1X8W_024 | 1/C/134:136, 1/C/182:189 | cWH basepair with bulged bases | geometric IL_2R8S_005 IL_84365.1 | |
| IL_1X8W_025 | 1/C/216:220, 1/C/253:257 | UAA/GAN | geometric IL_7RQB_060 NA | |
| IL_1X8W_026 | 1/C/223:226, 1/C/249:250 | Major groove platform with intercalated tWH | geometric IL_4PCJ_003 IL_09018.1 | |
| IL_1X8W_042 | 1/C/223:227, 1/C/247:250 | No text annotation | geometric IL_1U6B_013 NA | |
| IL_1X8W_027 | 1/C/226:227, 1/C/247:249 | Major groove intercalation | geometric IL_1U6B_010 NA | |
| IL_1X8W_028 | 1/C/262:264, 1/C/311:312 | Minor groove platform | geometric IL_1U6B_007 NA | |
| IL_1X8W_043 | 1/C/268:280, 1/C/298:307 | No text annotation | ||
| IL_1X8W_029 | 1/C/316:318, 1/C/331:405 | No text annotation | ||
| IL_1X8W_030 | 1/D/110:111, 1/D/209:211 | No text annotation | ||
| IL_1X8W_031 | 1/D/112:116, 1/D/205:208 | UAA/GAN variation | geometric IL_2R8S_002 IL_77691.4 | |
| IL_1X8W_032 | 1/D/121:127, 1/D/195:200 | No text annotation | ||
| IL_1X8W_033 | 1/D/129:131, 1/D/192:193 | Minor groove platform | geometric IL_4R4V_001 IL_92540.1 | |
| IL_1X8W_034 | 1/D/134:136, 1/D/182:189 | Isolated cWH basepair | geometric IL_4WZM_001 NA | |
| IL_1X8W_035 | 1/D/216:220, 1/D/253:257 | UAA/GAN | geometric IL_7RQB_060 NA | |
| IL_1X8W_036 | 1/D/223:227, 1/D/247:250 | Receptor of 11-nt loop-receptor motif | geometric IL_3IGI_012 IL_67767.2 | |
| IL_1X8W_037 | 1/D/262:264, 1/D/311:312 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_1X8W_044 | 1/D/268:280, 1/D/298:307 | No text annotation | ||
| IL_1X8W_046 | 1/D/314:315, 1/D/406:412 | No text annotation | ||
| IL_1X8W_039 | 1/D/316:318, 1/D/331:405 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1X8W_021 | No text annotation | ||
| IL_1X8W_038 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1X8W_001 | 1/A/138:141, 1/A/162:165, 1/A/175:180 | No text annotation | geometric J3_1GID_002 NA | |
| J3_1X8W_002 | 1/B/138:141, 1/B/162:165, 1/B/175:180 | No text annotation | geometric J3_1GID_002 NA | |
| J3_1X8W_005 | 1/C/138:141, 1/C/162:165, 1/C/175:180 | No text annotation | geometric J3_1GID_002 NA | |
| J3_1X8W_006 | 1/D/138:141, 1/D/162:165, 1/D/175:180 | No text annotation | geometric J3_1GID_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1X8W_003 | No text annotation | ||
| J3_1X8W_004 | No text annotation |
Coloring options: