HL_1X8W_017

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUUGCAAAG

Length

9 nucleotides

Bulged bases

1X8W|1|D|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1X8W_017 not in the Motif Atlas

Geometric match to HL_1GID_005

Geometric discrepancy: 0.3693

The information below is about HL_1GID_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03333.1

Basepair signature

cWW-F-F-F-cSH-F

Number of instances in this motif group

2

Unit IDs

1X8W|1|D|C|166
1X8W|1|D|U|167
1X8W|1|D|U|168
1X8W|1|D|G|169
1X8W|1|D|C|170
1X8W|1|D|A|171
1X8W|1|D|A|172
1X8W|1|D|A|173
1X8W|1|D|G|174

Current chains

Chain D

Tetrahymena ribozyme RNA

Nearby chains