HL_1XMO_027

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XMO_027 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1257

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1XMO|1|A|G|1265
1XMO|1|A|G|1266
1XMO|1|A|C|1267
1XMO|1|A|A|1268
1XMO|1|A|A|1269
1XMO|1|A|C|1270

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain V

30S ribosomal protein Thx