HL_1XNR_014

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XNR_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0708

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1XNR|1|A|G|617
1XNR|1|A|C|618
1XNR|1|A|U|619
1XNR|1|A|C|620
1XNR|1|A|A|621
1XNR|1|A|A|622
1XNR|1|A|C|623

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain D

16S Ribosomal protein S4

Chain P

16S Ribosomal protein S16