Motif HL_27656.1 Version HL_27656.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9PN5_106 | 9PN5 | 0.5919 | 0 | B5 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ||
| 2 | HL_7A0S_029 | 7A0S | 0.5390 | 1 | GNRA related | X | LSU rRNA | C | 1103 | G | 1104 | A | 1106 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH |
| 3 | HL_2A43_001 | 2A43 | 0.2210 | 1 | GNRA-like with tWH | A | Putative RNA-dependent RNA polymerase ribosomal frameshift site | G | 6 | C | 7 | A | 8 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH |
| 4 | HL_8B0X_013 | 8B0X | 0.0000 | 0 | GNRA-like with tWH (H) | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH |
| 5 | HL_4LFB_014 | 4LFB | 0.0981 | 0 | GNRA-like with tWH | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAC | 2 |
| UUUCAAG | 1 |
| CGUAAUAG | 1 |
| GCACCGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAA | 2 |
| UUCAA | 1 |
| GUAAUA | 1 |
| CACCGU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA-like with tWH (2)
- GNRA related (1)
- GNRA-like with tWH (H) (1)
- (1)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.37 | Max 0.65
Coloring options: