HL_1XOK_001

3D structure

PDB id

1XOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCACUGC

Length

7 nucleotides

Bulged bases

1XOK|1|A|C|852, 1XOK|1|A|C|857

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61409.1

Basepair signature

Not available

Number of instances in this motif group

2

Unit IDs

1XOK|1|A|G|851
1XOK|1|A|C|852
1XOK|1|A|A|856
1XOK|1|A|C|857
1XOK|1|A|U|858
1XOK|1|A|G|859
1XOK|1|A|C|860

Current chains

Chain A

alfalfa mosaic virus RNA 3' UTR

Nearby chains

Chain C

Coat protein