HL_1Y39_002

3D structure

PDB id

1Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y39_002 not in the Motif Atlas

Geometric match to HL_1MMS_002

Geometric discrepancy: 0.0657

The information below is about HL_1MMS_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1Y39|1|C|C|142
1Y39|1|C|G|143
1Y39|1|C|U|144
1Y39|1|C|A|145
1Y39|1|C|A|146
1Y39|1|C|U|147
1Y39|1|C|A|148
1Y39|1|C|G|149

Current chains

Chain C

58 Nucleotide Ribosomal 23S RNA Domain

Nearby chains