HL_1Y39_004

3D structure

PDB id

1Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y39_004 not in the Motif Atlas

Geometric match to HL_1MMS_002

Geometric discrepancy: 0.0649

The information below is about HL_1MMS_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1Y39|1|D|C|342
1Y39|1|D|G|343
1Y39|1|D|U|344
1Y39|1|D|A|345
1Y39|1|D|A|346
1Y39|1|D|U|347
1Y39|1|D|A|348
1Y39|1|D|G|349

Current chains

Chain D

58 Nucleotide Ribosomal 23S RNA Domain

Nearby chains