HL_1Y69_009

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1Y69|1|0|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_009 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.2567

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1Y69|1|0|C|316
1Y69|1|0|U|317
1Y69|1|0|G|318
1Y69|1|0|G|319
1Y69|1|0|A|320
1Y69|1|0|A|321
1Y69|1|0|A|322
1Y69|1|0|G|323

Current chains

Chain 0

23S ribosomal RNA

Nearby chains