HL_1Y69_041

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

1Y69|1|0|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_041 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.2938

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

1Y69|1|0|U|1647
1Y69|1|0|C|1648
1Y69|1|0|A|1649
1Y69|1|0|A|1650
1Y69|1|0|U|1651
1Y69|1|0|G|1652

Current chains

Chain 0

23S ribosomal RNA

Nearby chains