HL_1Y69_045

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

1Y69|1|0|A|1771, 1Y69|1|0|C|1772, 1Y69|1|0|C|1773, 1Y69|1|0|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2652

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

1Y69|1|0|G|1767
1Y69|1|0|U|1768
1Y69|1|0|U|1769
1Y69|1|0|U|1770
1Y69|1|0|A|1771
1Y69|1|0|C|1772
1Y69|1|0|C|1773
1Y69|1|0|A|1774
1Y69|1|0|A|1775
1Y69|1|0|A|1776
1Y69|1|0|A|1777
1Y69|1|0|U|1778
1Y69|1|0|C|1779

Current chains

Chain 0

23S ribosomal RNA

Nearby chains