HL_1Y69_051

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AAAUCACU

Length

8 nucleotides

Bulged bases

1Y69|1|0|A|2190, 1Y69|1|0|A|2191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_051 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.378

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

1Y69|1|0|A|2189
1Y69|1|0|A|2190
1Y69|1|0|A|2191
1Y69|1|0|U|2192
1Y69|1|0|C|2193
1Y69|1|0|A|2194
1Y69|1|0|C|2195
1Y69|1|0|U|2196

Current chains

Chain 0

23S ribosomal RNA

Nearby chains