HL_1Y69_054

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

1Y69|1|0|U|2285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_054 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.315

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

1Y69|1|0|G|2282
1Y69|1|0|G|2283
1Y69|1|0|U|2284
1Y69|1|0|U|2285
1Y69|1|0|G|2286
1Y69|1|0|G|2287
1Y69|1|0|A|2288
1Y69|1|0|A|2289
1Y69|1|0|A|2290
1Y69|1|0|U|2291
1Y69|1|0|C|2292

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA