HL_1Y69_055

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_055 not in the Motif Atlas

Geometric match to HL_7A0S_055

Geometric discrepancy: 0.1564

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

1Y69|1|0|C|2303
1Y69|1|0|G|2304
1Y69|1|0|C|2305
1Y69|1|0|A|2306
1Y69|1|0|A|2307
1Y69|1|0|A|2308
1Y69|1|0|G|2309
1Y69|1|0|G|2310

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L27