HL_1Y69_060

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

1Y69|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_060 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1865

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1Y69|1|0|U|2507
1Y69|1|0|G|2508
1Y69|1|0|A|2509
1Y69|1|0|A|2510
1Y69|1|0|G|2511
1Y69|1|0|A|2512
1Y69|1|0|A|2513
1Y69|1|0|G|2514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains