HL_1YHQ_068

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1YHQ|1|0|G|2786, 1YHQ|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YHQ_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0303

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1YHQ|1|0|C|2780
1YHQ|1|0|U|2781
1YHQ|1|0|G|2782
1YHQ|1|0|A|2783
1YHQ|1|0|A|2784
1YHQ|1|0|C|2785
1YHQ|1|0|G|2786
1YHQ|1|0|C|2787
1YHQ|1|0|A|2788
1YHQ|1|0|U|2789
1YHQ|1|0|C|2790
1YHQ|1|0|U|2791
1YHQ|1|0|A|2792
1YHQ|1|0|A|2793
1YHQ|1|0|G|2794

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P