HL_1YI2_024

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1YI2|1|0|U|840, 1YI2|1|0|A|844, 1YI2|1|0|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YI2_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.032

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1YI2|1|0|U|837
1YI2|1|0|C|838
1YI2|1|0|C|839
1YI2|1|0|U|840
1YI2|1|0|A|841
1YI2|1|0|C|842
1YI2|1|0|A|843
1YI2|1|0|A|844
1YI2|1|0|U|845
1YI2|1|0|A|846

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P