HL_1YIT_001
3D structure
- PDB id
- 1YIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGCCAAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1YIT_001 not in the Motif Atlas
- Homologous match to HL_4V9F_001
- Geometric discrepancy: 0.0437
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1YIT|1|0|U|55
1YIT|1|0|G|56
1YIT|1|0|C|57
1YIT|1|0|C|58
1YIT|1|0|A|59
1YIT|1|0|A|60
1YIT|1|0|G|61
1YIT|1|0|C|62
1YIT|1|0|U|63
1YIT|1|0|G|64
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 2
- 50S RIBOSOMAL PROTEIN L39E
- Chain S
- 50S RIBOSOMAL PROTEIN L23P
- Chain V
- 50S RIBOSOMAL PROTEIN L29P
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