HL_1YIT_039

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_039 not in the Motif Atlas

Homologous match to HL_4V9F_039

Geometric discrepancy: 0.0536

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

1YIT|1|0|C|1594
1YIT|1|0|G|1595
1YIT|1|0|U|1596
1YIT|1|0|A|1597
1YIT|1|0|A|1598
1YIT|1|0|U|1599
1YIT|1|0|G|1600

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L19E

Chain Z

50S RIBOSOMAL PROTEIN L37AE