HL_1YIT_050

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGGGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_050 not in the Motif Atlas

Geometric match to HL_4ANG_001

Geometric discrepancy: 0.3869

The information below is about HL_4ANG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

1YIT|1|0|G|1947
1YIT|1|0|G|1948
1YIT|1|0|G|1949
1YIT|1|0|G|1950
1YIT|1|0|G|1951
1YIT|1|0|U|1964
1YIT|1|0|C|1965

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains