HL_1YJ9_030

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1YJ9|1|0|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJ9_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.2152

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1YJ9|1|0|C|1168
1YJ9|1|0|U|1169
1YJ9|1|0|U|1170
1YJ9|1|0|A|1171
1YJ9|1|0|G|1172
1YJ9|1|0|A|1173
1YJ9|1|0|A|1174
1YJ9|1|0|G|1175
1YJ9|1|0|C|1176
1YJ9|1|0|A|1177
1YJ9|1|0|G|1178

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P