HL_1YJN_020

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJN_020 not in the Motif Atlas

Homologous match to HL_4V9F_020

Geometric discrepancy: 0.0476

The information below is about HL_4V9F_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1YJN|1|0|G|690
1YJN|1|0|G|691
1YJN|1|0|A|692
1YJN|1|0|A|693
1YJN|1|0|A|694
1YJN|1|0|C|695

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15P