RNA 3D Hub //

1YJN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1YJN_0011/0/55:64Pseudoknot with intercalation
homologous
HL_4V9F_001
HL_17803.1
HL_1YJN_0021/0/83:91Pseudoknot geometry
homologous
HL_4V9F_002
HL_52651.1
HL_1YJN_0031/0/118:122No text annotation
homologous
HL_4V9F_003
HL_75660.6
HL_1YJN_0051/0/136:142No text annotation
homologous
HL_4V9F_005
HL_13184.1
HL_1YJN_0061/0/164:171No text annotation
homologous
HL_4V9F_006
HL_48677.1
HL_1YJN_0071/0/195:201No text annotation
homologous
HL_4V9F_007
HL_81964.1
HL_1YJN_0081/0/217:223No text annotation
homologous
HL_4V9F_008
HL_76371.1
HL_1YJN_0091/0/252:257GNRA
geometric
HL_4V9F_009
HL_34789.1
HL_1YJN_0101/0/312:319T-loop with 2 stacked bulged bases
homologous
HL_4V9F_010
HL_13999.1
HL_1YJN_0111/0/326:330No text annotation
geometric
HL_4V9F_011
HL_75660.6
HL_1YJN_0121/0/334:342T-loop with unstacked turn
homologous
HL_4V9F_012
HL_27670.3
HL_1YJN_0131/0/390:399No text annotation
homologous
HL_4V9F_013
HL_91228.1
HL_1YJN_0141/0/416:424Pseudoknot geometry
homologous
HL_4V9F_014
HL_52651.1
HL_1YJN_0151/0/468:473GNRA
homologous
HL_4V9F_015
HL_34789.1
HL_1YJN_0161/0/493:499GNRA
homologous
HL_4V9F_016
HL_34789.1
HL_1YJN_0171/0/576:581GNRA
geometric
HL_4V9F_017
HL_34789.1
HL_1YJN_0181/0/623:632T-loop with 2 stacked bulged bases
homologous
HL_4V9F_018
HL_33597.1
HL_1YJN_0191/0/670:676No text annotation
geometric
HL_4V9F_019
HL_41169.1
HL_1YJN_0201/0/690:695GNRA
homologous
HL_4V9F_020
HL_34789.1
HL_1YJN_0221/0/733:738GNRA
homologous
HL_4V9F_022
HL_34789.1
HL_1YJN_0231/0/804:809GNRA
homologous
HL_4V9F_023
HL_34789.1
HL_1YJN_0241/0/837:846No text annotation
homologous
HL_4V9F_024
HL_50204.1
HL_1YJN_0251/0/872:878No text annotation
homologous
HL_4V9F_025
HL_92935.1
HL_1YJN_0261/0/919:924No text annotation
homologous
HL_4V9F_026
HL_27530.1
HL_1YJN_0281/0/1054:1060GNRA
homologous
HL_4V9F_028
HL_34789.1
HL_1YJN_0291/0/1076:1083No text annotation
homologous
HL_4V9F_029
HL_47171.1
HL_1YJN_0731/0/1169:1177No text annotation
HL_1YJN_0311/0/1196:1203GNRA wlth tandem sheared
homologous
HL_5D8H_002
HL_98423.1
HL_1YJN_0321/0/1274:1282Anticodon loop related
geometric
HL_4V9F_032
HL_68642.1
HL_1YJN_0331/0/1326:1331GNRA
geometric
HL_4V9F_033
HL_34789.1
HL_1YJN_0341/0/1387:1395T-loop with 2 stacked bulged bases
homologous
HL_4V9F_034
HL_33597.1
HL_1YJN_0351/0/1430:1436Pseudoknot geometry with 3' bulge
geometric
HL_4V9F_035
HL_49081.1
HL_1YJN_0361/0/1468:1474GNRA
homologous
HL_4V9F_036
HL_34789.1
HL_1YJN_0371/0/1498:1507No text annotation
homologous
HL_4V9F_037
HL_77449.1
HL_1YJN_0391/0/1594:1600Other HL
homologous
HL_4V9F_039
HL_67772.1
HL_1YJN_0401/0/1628:1633GNRA
homologous
HL_4V9F_040
HL_34789.1
HL_1YJN_0411/0/1651:1655Mini UNCG
homologous
HL_4V9F_041
HL_90436.1
HL_1YJN_0421/0/1687:1694No text annotation
geometric
HL_4V9F_042
HL_28592.1
HL_1YJN_0431/0/1705:1713GNRA wlth tandem sheared
homologous
HL_4V9F_043
HL_98423.1
HL_1YJN_0441/0/1769:1774UNCG
geometric
HL_4V9F_044
HL_61337.1
HL_1YJN_0451/0/1793:1799GNRA
homologous
HL_4V9F_045
HL_34789.1
HL_1YJN_0461/0/1808:1812No text annotation
geometric
HL_4V9F_046
HL_80709.4
HL_1YJN_0471/0/1833:1843No text annotation
homologous
HL_4V9F_047
HL_87681.1
HL_1YJN_0481/0/1862:1867GNRA
homologous
HL_4V9F_048
HL_34789.1
HL_1YJN_0491/0/1916:1923GNRA related
homologous
HL_4V9F_049
HL_91620.1
HL_1YJN_0511/0/1990:1998No text annotation
geometric
HL_4V9F_051
HL_61418.1
HL_1YJN_0521/0/2068:2077No text annotation
homologous
HL_4V9F_052
HL_78372.1
HL_1YJN_0541/0/2248:2253GNRA
homologous
HL_4V9F_054
HL_34789.1
HL_1YJN_0551/0/2281:2289No text annotation
homologous
HL_4V9F_055
HL_11974.1
HL_1YJN_0561/0/2298:2310No text annotation
homologous
HL_4V9F_056
HL_02042.1
HL_1YJN_0581/0/2358:2365Pseudoknot geometry
homologous
HL_4V9F_058
HL_52651.1
HL_1YJN_0591/0/2389:2399No text annotation
homologous
HL_4V9F_059
HL_02042.1
HL_1YJN_0601/0/2411:2416GNRA
homologous
HL_4V9F_060
HL_34789.1
HL_1YJN_0611/0/2442:2450Pseudoknot geometry
homologous
HL_4V9F_061
HL_52651.1
HL_1YJN_0621/0/2506:2514No text annotation
geometric
HL_4V9F_062
HL_52011.1
HL_1YJN_0631/0/2563:2570GNRA variation
homologous
HL_4V9F_063
HL_46665.1
HL_1YJN_0741/0/2586:2592No text annotation
homologous
HL_4V9F_073
HL_48677.1
HL_1YJN_0651/0/2629:2634GNRA
geometric
HL_4V9F_065
HL_34789.1
HL_1YJN_0661/0/2695:2700GNRA
geometric
HL_4V9F_066
HL_34789.1
HL_1YJN_0671/0/2737:2742Ribsomal LSU H95
geometric
HL_4V9F_067
HL_12125.1
HL_1YJN_0681/0/2780:2794No text annotation
homologous
HL_4V9F_068
HL_53269.1
HL_1YJN_0691/0/2836:2844No text annotation
homologous
HL_4V9F_069
HL_37889.1
HL_1YJN_0701/0/2876:2881GNRA
homologous
HL_4V9F_070
HL_34789.1
HL_1YJN_0751/9/33:47No text annotation
homologous
HL_4V9F_074
HL_97756.3
HL_1YJN_0711/9/37:43No text annotation
homologous
HL_4V9F_071
HL_59381.1
HL_1YJN_0721/9/89:94GNRA
homologous
HL_4V9F_072
HL_34789.1

Problematic loops

#loop idProblemSequence
HL_1YJN_004Mini UNCG related
HL_1YJN_021Mini UNCG
HL_1YJN_027No text annotation
HL_1YJN_030No text annotation
HL_1YJN_038No text annotation
HL_1YJN_050No text annotation
HL_1YJN_053No text annotation
HL_1YJN_057No text annotation
HL_1YJN_064No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1YJN_0011/0/21:27,
1/0/516:522		Triple sheared with non-canonical cWW
homologous
IL_4V9F_001
IL_22311.1
IL_1YJN_0021/0/33:34,
1/0/448:450		Single bulged A
geometric
IL_4V9F_002
IL_14190.1
IL_1YJN_0031/0/39:41,
1/0/440:443		Major groove platform with extra cWW
homologous
IL_4V9F_003
IL_36931.1
IL_1YJN_0041/0/77:81,
1/0/93:100		Kink-turn
homologous
IL_4V9F_004
IL_54465.1
IL_1YJN_0051/0/153:154,
1/0/182:184		Single stack bend
homologous
IL_4V9F_005
IL_15011.1
IL_1YJN_0061/0/158:164,
1/0/171:178		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_006
IL_62167.1
IL_1YJN_0071/0/210:216,
1/0/224:229		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_007
IL_02666.1
IL_1YJN_0081/0/245:248,
1/0/265:266		Major groove platform; stack outside cWW
geometric
IL_4V9F_008
IL_74641.1
IL_1YJN_1051/0/245:249,
1/0/260:266		Kink-turn with embedded cWW pair
homologous
IL_4V9F_108
IL_65996.1
IL_1YJN_0091/0/248:249,
1/0/260:265		No text annotation
homologous
IL_4V9F_009
IL_10396.1
IL_1YJN_0101/0/274:275,
1/0/374:376		Single bulged G
geometric
IL_4V9F_010
IL_28408.1
IL_1YJN_0111/0/280:287,
1/0/365:369		No text annotation
homologous
IL_4V9F_011
IL_22028.1
IL_1YJN_0121/0/290:296,
1/0/355:362		8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
homologous
IL_4V9F_012
IL_59724.1
IL_1YJN_0131/0/307:309,
1/0/322:323		Single bulged U
geometric
IL_4V9F_013
IL_97561.1
IL_1YJN_0141/0/487:491,
1/0/501:515		No text annotation
geometric
IL_4V9F_014
IL_31504.1
IL_1YJN_0151/0/548:553,
1/0/606:608		No text annotation
geometric
IL_4V9F_015
IL_59302.1
IL_1YJN_0161/0/554:555,
1/0/602:605		No text annotation
geometric
IL_4V9F_016
IL_22002.1
IL_1YJN_0171/0/558:560,
1/0/597:599		Isolated non-canonical cWW pair
homologous
IL_4V9F_017
IL_01003.1
IL_1YJN_0181/0/562:567,
1/0/591:595		Triple sheared related
homologous
IL_4V9F_018
IL_67427.1
IL_1YJN_0191/0/567:572,
1/0/585:591		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_019
IL_16458.5
IL_1YJN_0201/0/663:667,
1/0/679:683		AAA cross-strand stack
homologous
IL_4V9F_020
IL_66798.3
IL_1YJN_0211/0/699:702,
1/0/726:727		Multiple bulged bases
geometric
IL_4V9F_021
IL_71421.1
IL_1YJN_0221/0/705:709,
1/0/719:723		tSH-tHW-tHS
homologous
IL_4V9F_022
IL_05821.1
IL_1YJN_0231/0/763:765,
1/0/899:901		Isolated non-canonical cWW pair
homologous
IL_4V9F_023
IL_01003.1
IL_1YJN_0241/0/765:769,
1/0/892:899		tHW-tHW cross-strand stack
homologous
IL_4V9F_024
IL_73855.1
IL_1YJN_0251/0/788:789,
1/0/856:858		Single bulged A
geometric
IL_4V9F_025
IL_14190.1
IL_1YJN_0261/0/793:794,
1/0/819:821		Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_1YJN_0271/0/794:798,
1/0/815:819		Triple sheared
homologous
IL_4V9F_027
IL_15190.1
IL_1YJN_0281/0/830:833,
1/0/849:851		Major groove platform with extra cWW
geometric
IL_4V9F_028
IL_36931.1
IL_1YJN_0291/0/834:836,
1/0/847:848		Single bulged U
geometric
IL_4V9F_029
IL_97561.1
IL_1YJN_0301/0/868:870,
1/0/880:884		Multiple bulged bases
homologous
IL_4V9F_030
IL_57881.1
IL_1YJN_0311/0/936:940,
1/0/1026:1034		Kink-turn
homologous
IL_4V9F_031
IL_94910.1
IL_1YJN_0321/0/942:944,
1/0/1023:1024		Minor groove platform related
geometric
IL_7TZS_003
IL_34520.1
IL_1YJN_0331/0/952:956,
1/0/1011:1015		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_4V9F_033
IL_38862.5
IL_1YJN_0341/0/956:957,
1/0/1009:1011		Minor groove platform
homologous
IL_4V9F_034
IL_34520.1
IL_1YJN_0351/0/958:964,
1/0/1004:1008		No text annotation
homologous
IL_4V9F_035
IL_38603.1
IL_1YJN_0361/0/965:968,
1/0/1000:1003		No text annotation
geometric
IL_4V9F_036
IL_02203.1
IL_1YJN_0371/0/1095:1099,
1/0/1257:1261		UAA/GAN
homologous
IL_4V9F_037
IL_08938.1
IL_1YJN_0381/0/1101:1108,
1/0/1254:1255		SSU/LSU pseudoknot
homologous
IL_4V9F_038
IL_11411.1
IL_1YJN_0391/0/1108:1110,
1/0/1253:1254		Single bulged U
geometric
IL_4V9F_039
IL_97561.1
IL_1YJN_0401/0/1115:1121,
1/0/1243:1248		Kink-turn related
homologous
IL_4V9F_040
IL_57188.6
IL_1YJN_1071/0/1122:1134,
1/0/1228:1242		No text annotation
homologous
IL_4V9F_109
IL_39721.1
IL_1YJN_0411/0/1136:1138,
1/0/1225:1226		Single bulged G
homologous
IL_4V9F_041
IL_28408.1
IL_1YJN_0421/0/1147:1155,
1/0/1212:1216		Kink-turn
homologous
IL_4V9F_042
IL_99692.3
IL_1YJN_0431/0/1163:1166,
1/0/1180:1183		No text annotation
homologous
IL_5D8H_002
IL_28482.1
IL_1YJN_0441/0/1269:1270,
1/0/1286:1289		Bulged stacked bases
homologous
IL_4V9F_045
IL_72211.1
IL_1YJN_0451/0/1301:1303,
1/0/1351:1354		Isolated cWS basepair
geometric
IL_4V9F_046
IL_42997.4
IL_1YJN_0461/0/1303:1305,
1/0/1349:1351		Isolated non-canonical cWW pair
geometric
IL_4V9F_047
IL_71625.1
IL_1YJN_0471/0/1312:1319,
1/0/1338:1342		Kink-turn
homologous
IL_4V9F_048
IL_90775.1
IL_1YJN_0481/0/1367:1373,
1/0/2052:2057		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_049
IL_02666.1
IL_1YJN_0491/0/1416:1419,
1/0/1678:1679		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.1
IL_1YJN_0501/0/1425:1429,
1/0/1437:1439		C-loop
geometric
IL_4V9F_051
IL_63596.12
IL_1YJN_0511/0/1456:1460,
1/0/1483:1489		UAA/GAN
homologous
IL_4V9F_052
IL_82787.1
IL_1YJN_0521/0/1465:1467,
1/0/1475:1478		No text annotation
homologous
IL_4V9F_053
IL_86407.1
IL_1YJN_0531/0/1521:1529,
1/0/1662:1665		No text annotation
homologous
IL_4V9F_054
IL_41853.1
IL_1YJN_0541/0/1542:1546,
1/0/1639:1643		tSH-tHW-tHS
homologous
IL_4V9F_055
IL_05821.1
IL_1YJN_0551/0/1570:1574,
1/0/1622:1627		tSH-tHH-tHS
geometric
IL_4V9F_056
IL_62654.1
IL_1YJN_0561/0/1578:1583,
1/0/1612:1618		No text annotation
homologous
IL_4V9F_057
IL_34822.1
IL_1YJN_0571/0/1587:1592,
1/0/1602:1608		Kink-turn
homologous
IL_4V9F_058
IL_32016.1
IL_1YJN_0581/0/1728:1734,
1/0/2045:2047		No text annotation
homologous
IL_4V9F_059
IL_12566.5
IL_1YJN_0591/0/1741:1743,
1/0/2036:2038		Isolated tWW turn
geometric
IL_4V9F_060
IL_10432.1
IL_1YJN_0601/0/1744:1747,
1/0/2034:2035		Major groove platform; stack outside cWW
geometric
IL_4V9F_061
IL_74641.1
IL_1YJN_1091/0/1744:1752,
1/0/2031:2035		No text annotation
homologous
IL_4V9F_111
IL_80252.1
IL_1YJN_0611/0/1747:1752,
1/0/2031:2034		Intercalated tWH
homologous
IL_4V9F_062
IL_28217.1
IL_1YJN_0621/0/1764:1769,
1/0/1774:1780		tSH-tSH-tHH-tHS
homologous
IL_4V9F_063
IL_20700.1
IL_1YJN_0631/0/1826:1827,
1/0/2021:2023		Single bulged A
geometric
IL_4V9F_064
IL_14190.1
IL_1YJN_0641/0/1854:1860,
1/0/1869:1877		Kink-turn related
homologous
IL_4V9F_065
IL_17069.6
IL_1YJN_0651/0/1893:1896,
1/0/1943:1944		Minor groove platform, major groove intercalation
homologous
IL_4V9F_066
IL_73108.1
IL_1YJN_0661/0/1897:1898,
1/0/1939:1942		Major groove intercalation
homologous
IL_4V9F_067
IL_71421.1
IL_1YJN_0671/0/1902:1905,
1/0/1934:1935		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_73108.1
IL_1YJN_0681/0/1907:1913,
1/0/1926:1932		No text annotation
homologous
IL_4V9F_069
IL_65359.1
IL_1YJN_0691/0/1974:1975,
1/0/2005:2008		Bulged stacked bases
geometric
IL_4V9F_070
IL_24886.1
IL_1YJN_0701/0/1975:1986,
1/0/2002:2005		No text annotation
homologous
IL_4V9F_071
IL_04332.3
IL_1YJN_0711/0/2090:2093,
1/0/2652:2654		No text annotation
homologous
IL_4V9F_072
IL_75527.1
IL_1YJN_0721/0/2095:2097,
1/0/2647:2650		No text annotation
homologous
IL_4V9F_073
IL_80025.1
IL_1YJN_0731/0/2108:2110,
1/0/2477:2478		Single bulged U
geometric
IL_4V9F_074
IL_97561.1
IL_1YJN_0741/0/2111:2112,
1/0/2473:2476		Minor groove platform
geometric
IL_5J7L_324
NA
IL_1YJN_0751/0/2122:2124,
1/0/2269:2272		Isolated tHS basepair with bulges
homologous
IL_4V9F_076
IL_87316.1
IL_1YJN_0761/0/2279:2280,
1/0/2290:2292		Single bulged A
geometric
IL_4V9F_079
IL_14190.1
IL_1YJN_0771/0/2331:2333,
1/0/2351:2355		Isolated tHS basepair with bulges
homologous
IL_4V9F_080
IL_14250.1
IL_1YJN_0781/0/2436:2438,
1/0/2454:2455		Single stack bend
geometric
IL_4V9F_081
IL_15011.1
IL_1YJN_0791/0/2489:2490,
1/0/2531:2533		Major groove platform
geometric
IL_4V9F_082
IL_48076.7
IL_1YJN_0801/0/2492:2494,
1/0/2528:2529		Major groove platform
geometric
IL_4V9F_083
IL_46637.1
IL_1YJN_0811/0/2494:2496,
1/0/2524:2528		Major groove minor groove platform with extra cWW
homologous
IL_4V9F_084
IL_36931.1
IL_1YJN_0821/0/2501:2505,
1/0/2515:2519		Double sheared with non-canonical cWW
homologous
IL_4V9F_085
IL_87767.1
IL_1YJN_0831/0/2542:2543,
1/0/2615:2617		Major groove platform
homologous
IL_4V9F_086
IL_46637.1
IL_1YJN_0841/0/2545:2547,
1/0/2609:2613		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_087
IL_68118.1
IL_1YJN_0851/0/2547:2548,
1/0/2606:2609		Multiple bulged bases
homologous
IL_4V9F_088
IL_44609.1
IL_1YJN_0861/0/2557:2558,
1/0/2575:2578		Major groove platform with intercalation
homologous
IL_4V9F_089
IL_94991.1
IL_1YJN_0871/0/2626:2627,
1/0/2636:2638		Single bulged A
geometric
IL_5J7L_344
NA
IL_1YJN_0881/0/2672:2676,
1/0/2809:2817		tSH-tHS-tHW
geometric
IL_4WF9_099
IL_04638.4
IL_1YJN_0891/0/2689:2695,
1/0/2700:2705		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_4V9F_092
IL_02666.1
IL_1YJN_0901/0/2717:2721,
1/0/2761:2763		C-loop
homologous
IL_4V9F_093
IL_63596.12
IL_1YJN_0911/0/2724:2728,
1/0/2754:2758		UAA/GAN variation
homologous
IL_4V9F_094
IL_45790.1
IL_1YJN_0921/0/2732:2733,
1/0/2746:2750		Bulged stacked bases
homologous
IL_4V9F_095
IL_07171.1
IL_1YJN_0931/0/2772:2777,
1/0/2797:2802		UAA/GAN with extra cWW
homologous
IL_4V9F_096
IL_91079.1
IL_1YJN_0941/0/2855:2857,
1/0/2900:2903		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_68118.1
IL_1YJN_0951/0/2860:2861,
1/0/2895:2897		Single bulged A
homologous
IL_4V9F_098
IL_14190.1
IL_1YJN_0961/0/2864:2869,
1/0/2888:2892		tHS double platform
homologous
IL_4V9F_099
IL_48489.1
IL_1YJN_0971/0/2873:2876,
1/0/2881:2884		Double sheared
geometric
IL_4V9F_100
IL_58355.1
IL_1YJN_0981/9/15:16,
1/9/64:66		Major groove intercalation
homologous
IL_4V9F_101
IL_14190.1
IL_1YJN_0991/9/21:28,
1/9/54:59		No text annotation
IL_1YJN_1001/9/29:30,
1/9/50:53		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.1
IL_1YJN_1011/9/33:37,
1/9/43:47		Symmetric double minor groove platform
geometric
IL_4V9F_104
IL_58103.12
IL_1YJN_1021/9/72:74,
1/9/107:109		Isolated non-canonical cWW pair
homologous
IL_4V9F_105
IL_01003.1
IL_1YJN_1101/9/75:81,
1/9/101:106		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_106
IL_02666.1
IL_1YJN_1041/9/86:88,
1/9/95:96		Single bulged U
homologous
IL_4V9F_107
IL_97561.1

Problematic loops

#loop idProblemSequence
IL_1YJN_106Tandem non-canonical cWW pairs
IL_1YJN_108No text annotation
IL_1YJN_1038x7 Sarcin-Ricin; G-bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1YJN_0111/0/27:28,
1/0/480:487,
1/0/515:516		No text annotation
geometric
J3_4V9F_011
J3_68715.1
J3_1YJN_0151/0/27:28,
1/0/480:491,
1/0/501:516		No text annotation
homologous
J3_4V9F_012
J3_24879.1
J3_1YJN_0161/0/29:32,
1/0/451:467,
1/0/474:479		No text annotation
homologous
J3_4V9F_013
J3_07616.1
J3_1YJN_0121/0/52:53,
1/0/66:72,
1/0/105:109		No text annotation
homologous
J3_4V9F_014
J3_01004.1
J3_1YJN_0011/0/240:244,
1/0/267:273,
1/0/377:379		No text annotation
homologous
J3_4V9F_001
J3_96248.1
J3_1YJN_0171/0/302:307,
1/0/323:332,
1/0/344:349		No text annotation
homologous
J3_4V9F_015
J3_59706.1
J3_1YJN_0021/0/774:780,
1/0/866:868,
1/0/884:887		No text annotation
homologous
J3_4V9F_002
J3_46658.1
J3_1YJN_0031/0/789:791,
1/0/823:828,
1/0/853:856		No text annotation
homologous
J3_4V9F_003
J3_69816.1
J3_1YJN_0041/0/1159:1161,
1/0/1185:1194,
1/0/1205:1208		No text annotation
J3_1YJN_0051/0/1404:1409,
1/0/1700:1703,
1/0/1715:1718		No text annotation
homologous
J3_4V9F_005
J3_32852.7
J3_1YJN_0061/0/1412:1415,
1/0/1680:1686,
1/0/1695:1697		No text annotation
homologous
J3_4V9F_006
J3_76012.1
J3_1YJN_0131/0/1450:1455,
1/0/1490:1494,
1/0/1511:1512		No text annotation
homologous
J3_4V9F_016
J3_94309.1
J3_1YJN_0181/0/1531:1535,
1/0/1650:1651,
1/0/1655:1660		No text annotation
homologous
J3_4V9F_017
J3_08594.1
J3_1YJN_0071/0/2131:2134,
1/0/2241:2245,
1/0/2256:2262		No text annotation
homologous
J3_4V9F_007
J3_86017.1
J3_1YJN_0191/0/2316:2318,
1/0/2421:2432,
1/0/2459:2464		No text annotation
homologous
J3_4V9F_018
J3_44792.1
J3_1YJN_0081/0/2329:2331,
1/0/2355:2357,
1/0/2366:2371		No text annotation
homologous
J3_4V9F_008
J3_05327.1
J3_1YJN_0091/0/2552:2555,
1/0/2580:2583,
1/0/2595:2602		No text annotation
homologous
J3_4V9F_009
J3_68010.1
J3_1YJN_0141/0/2831:2832,
1/0/2848:2853,
1/0/2905:2909		No text annotation
homologous
J3_4V9F_019
J3_76911.2
J3_1YJN_0101/9/9:14,
1/9/67:71,
1/9/110:114		5S rRNA junction
homologous
J3_4V9F_010
J3_89737.1
J4_1YJN_0011/0/239:240,
1/0/379:384,
1/0/405:412,
1/0/428:431		No text annotation
homologous
J4_4V9F_001
J4_94698.1
J4_1YJN_0021/0/302:307,
1/0/323:326,
1/0/330:332,
1/0/344:349		No text annotation
homologous
J4_4V9F_002
J4_11418.1
J4_1YJN_0031/0/1374:1382,
1/0/1400:1401,
1/0/1721:1725,
1/0/2050:2051		No text annotation
homologous
J4_4V9F_003
J4_75426.1
J4_1YJN_0041/0/1416:1420,
1/0/1444:1449,
1/0/1513:1514,
1/0/1672:1679		No text annotation
homologous
J4_4V9F_004
J4_77353.1
J4_1YJN_0051/0/1419:1420,
1/0/1444:1449,
1/0/1513:1514,
1/0/1672:1678		No text annotation
homologous
J4_4V9F_005
J4_48150.1
J4_1YJN_0061/0/1551:1552,
1/0/1569:1570,
1/0/1627:1628,
1/0/1633:1634		No text annotation
homologous
J4_4V9F_006
J4_75575.1
J4_1YJN_0071/0/1828:1832,
1/0/1844:1848,
1/0/1883:1887,
1/0/2015:2020		No text annotation
homologous
J4_4V9F_007
J4_78485.1
J4_1YJN_0081/0/1889:1891,
1/0/1946:1947,
1/0/1965:1974,
1/0/2008:2013		No text annotation
homologous
J4_4V9F_008
J4_42306.1
J4_1YJN_0091/0/2319:2323,
1/0/2377:2381,
1/0/2407:2409,
1/0/2418:2420		No text annotation
homologous
J4_4V9F_009
J4_98139.1
J4_1YJN_0101/0/2679:2682,
1/0/2712:2713,
1/0/2767:2770,
1/0/2804:2806		No text annotation
homologous
J4_4V9F_010
J4_28473.1
J5_1YJN_0011/0/43:50,
1/0/111:116,
1/0/124:125,
1/0/129:132,
1/0/146:148		No text annotation
homologous
J5_4V9F_001
J5_99180.1
J5_1YJN_0021/0/537:539,
1/0/617:621,
1/0/634:636,
1/0/1365:1366,
1/0/2058:2059		No text annotation
homologous
J5_4V9F_002
J5_43153.6
J5_1YJN_0031/0/641:646,
1/0/759:762,
1/0/902:905,
1/0/1300:1301,
1/0/1354:1360		No text annotation
homologous
J5_4V9F_003
J5_15067.1
J5_1YJN_0041/0/658:661,
1/0/685:689,
1/0/696:699,
1/0/727:728,
1/0/743:747		No text annotation
homologous
J5_4V9F_004
J5_43592.1
J5_1YJN_0051/0/658:661,
1/0/685:689,
1/0/696:702,
1/0/726:728,
1/0/743:747		No text annotation
homologous
J5_4V9F_005
J5_63867.1
J5_1YJN_0061/0/1752:1760,
1/0/1784:1785,
1/0/1807:1808,
1/0/1812:1820,
1/0/2029:2031		No text annotation
homologous
J5_4V9F_006
J5_99177.1
J5_1YJN_0071/0/2098:2105,
1/0/2481:2489,
1/0/2533:2541,
1/0/2618:2623,
1/0/2641:2646		No text annotation
J5_1YJN_0081/0/2115:2118,
1/0/2276:2279,
1/0/2292:2293,
1/0/2315:2316,
1/0/2464:2470		No text annotation
homologous
J5_4V9F_008
J5_96125.1
J6_1YJN_0011/0/41:42,
1/0/149:153,
1/0/184:194,
1/0/202:206,
1/0/233:237,
1/0/433:440		No text annotation
J6_1YJN_0021/0/2115:2118,
1/0/2276:2279,
1/0/2292:2293,
1/0/2315:2318,
1/0/2421:2432,
1/0/2459:2470		No text annotation
J7_1YJN_0011/0/910:915,
1/0/928:931,
1/0/1039:1045,
1/0/1069:1074,
1/0/1085:1089,
1/0/1267:1268,
1/0/1290:1295		No text annotation

Problematic loops

No problematic loops


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