HL_1YJN_055

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1YJN|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJN_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0506

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1YJN|1|0|C|2281
1YJN|1|0|U|2282
1YJN|1|0|G|2283
1YJN|1|0|G|2284
1YJN|1|0|G|2285
1YJN|1|0|G|2286
1YJN|1|0|C|2287
1YJN|1|0|G|2288
1YJN|1|0|G|2289

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E