HL_1YJN_056

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1YJN|1|0|A|2302, 1YJN|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJN_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0321

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1YJN|1|0|C|2298
1YJN|1|0|G|2299
1YJN|1|0|A|2300
1YJN|1|0|A|2301
1YJN|1|0|A|2302
1YJN|1|0|A|2303
1YJN|1|0|G|2304
1YJN|1|0|A|2305
1YJN|1|0|U|2306
1YJN|1|0|A|2307
1YJN|1|0|U|2308
1YJN|1|0|C|2309
1YJN|1|0|G|2310

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S RIBOSOMAL PROTEIN L10E

Chain Q

50S ribosomal protein L21e