HL_1YJN_060
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1YJN_060 not in the Motif Atlas
- Homologous match to HL_4V9F_060
- Geometric discrepancy: 0.0479
- The information below is about HL_4V9F_060
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
1YJN|1|0|C|2411
1YJN|1|0|G|2412
1YJN|1|0|A|2413
1YJN|1|0|A|2414
1YJN|1|0|A|2415
1YJN|1|0|G|2416
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
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