3D structure

PDB id
1YJN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1YJN_060 not in the Motif Atlas
Homologous match to HL_4V9F_060
Geometric discrepancy: 0.0479
The information below is about HL_4V9F_060
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

1YJN|1|0|C|2411
1YJN|1|0|G|2412
1YJN|1|0|A|2413
1YJN|1|0|A|2414
1YJN|1|0|A|2415
1YJN|1|0|G|2416

Current chains

Chain 0
23S Ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain N
50S ribosomal protein L18P
Chain Q
50S ribosomal protein L21e

Coloring options:


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