HL_1YJN_069
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUACAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 1YJN|1|0|U|2837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1YJN_069 not in the Motif Atlas
- Homologous match to HL_4V9F_069
- Geometric discrepancy: 0.0503
- The information below is about HL_4V9F_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
1YJN|1|0|G|2836
1YJN|1|0|U|2837
1YJN|1|0|A|2838
1YJN|1|0|C|2839
1YJN|1|0|A|2840
1YJN|1|0|A|2841
1YJN|1|0|G|2842
1YJN|1|0|A|2843
1YJN|1|0|C|2844
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
Coloring options: