3D structure

PDB id
1YKV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
1YKV|1|D|U|222
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48112.1
Basepair signature
cWW-tSW-R
Number of instances in this motif group
59

Unit IDs

1YKV|1|D|C|220
1YKV|1|D|U|221
1YKV|1|D|U|222
1YKV|1|D|C|223
1YKV|1|D|G|224
1YKV|1|D|G|225

Current chains

Chain D
Diels-Alder ribozyme

Nearby chains

Chain B
Diels-Alder ribozyme

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0472 s
Application loaded.