HL_1YKV_002
3D structure
- PDB id
- 1YKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUCGG
- Length
- 6 nucleotides
- Bulged bases
- 1YKV|1|D|U|222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48112.1
- Basepair signature
- cWW-tSW-R
- Number of instances in this motif group
- 59
Unit IDs
1YKV|1|D|C|220
1YKV|1|D|U|221
1YKV|1|D|U|222
1YKV|1|D|C|223
1YKV|1|D|G|224
1YKV|1|D|G|225
Current chains
- Chain D
- Diels-Alder ribozyme
Nearby chains
- Chain B
- Diels-Alder ribozyme
Coloring options: