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Motif HL_48112.1 Version HL_48112.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_3J7Y_0183J7Y0.66871A LSU rRNAA2319A2320C2322A2323U2324cWW
2 HL_4U7U_0024U7U0.54571XcrRNAC51G52C54A55G56cWWtSW
3 HL_3V7E_0023V7E0.51921UNCG variationC SAM-I riboswitchC65U66C68G69G70cWW
4 HL_3JAM_0053JAM0.536712 SSU rRNAC229U230C232G233G234cWW
5 HL_4V4Q_1264V4Q0.33341CA SSU rRNAC1028U1029C1031G1032G1033cWW
6 HL_4V4Q_1084V4Q0.33891UNCG (H)CA SSU rRNAC207U208C210G211G212cWWntSW
7 HL_1YKV_0021YKV0.22331DDiels-Alder ribozymeC220U221C223G224G225ncWWtSW
8 HL_3JAM_0113JAM0.18531UNCG (H)2 SSU rRNAC413C414A416G417G418cWWntSW
9 HL_5A2Q_0095A2Q0.14151UNCG (H)2 SSU rRNAC462C463A465G466G467cWWtSW
10 HL_3J79_0433J790.11601A LSU rRNAC2191U2192C2194G2195G2196cWWtSW
11 HL_4V88_1964V880.13471UNCGA6 SSU rRNAC414C415A417G418G419cWWtSW
12 HL_3J7P_0443J7P0.16341UNCG (H)5 LSU rRNAC2872U2873C2875G2876G2877cWWntSW
13 HL_5AJ0_0475AJ00.15181A2 LSU rRNAC2851U2852C2854G2855G2856cWWtSW
14 HL_3J7P_0863J7P0.18571UNCG (H)S2 SSU rRNAC462C463A465G466G467cWWntSW
15 HL_3J7A_0093J7A0.21981UNCG (H)A SSU rRNAC420U421A423G424G425cWWtSW
16 HL_5J7L_1715J7L0.27221UNCGDA LSU rRNAC1533U1534C1536G1537G1538cWWtSW
17 HL_4V91_0434V910.123311 LSU rRNAC1923U1924C1926G1927G1928cWWtSW
18 HL_4V88_1564V880.07231UNCG (H)A5 LSU rRNAC1923U1924C1926G1927G1928cWWtSW
19 HL_4V8P_2024V8P0.06961UNCG (H)F1 LSU rRNAC1947U1948C1950G1951G1952cWWtSW
20 HL_5FDU_0415FDU0.000011A LSU rRNAC1738U1739C1741G1742G1743cWWtSW
21 HL_5J7L_1755J7L0.05571UNCGDA LSU rRNAC1691U1692C1694G1695G1696cWWtSW
22 HL_4IOA_0414IOA0.09611UNCGX LSU rRNAC1708U1709C1711G1712G1713cWWtSW
23 HL_4PMI_0064PMI0.11281UNCGARev-Response-Element RNAC53||||6_445U54||||6_445C56||||6_445G57||||6_445G58||||6_445cWWtSW
24 HL_4PMI_0024PMI0.11281UNCGARev-Response-Element RNAC53||||13_455U54||||13_455C56||||13_455G57||||13_455G58||||13_455cWWtSW
25 HL_4PMI_0044PMI0.11281UNCGARev-Response-Element RNAC53U54C56G57G58cWWtSW
26 HL_4PMI_0014PMI0.11281UNCGARev-Response-Element RNAC53||||12_455U54||||12_455C56||||12_455G57||||12_455G58||||12_455cWWtSW
27 HL_4PMI_0034PMI0.11281UNCGARev-Response-Element RNAC53||||18_445U54||||18_445C56||||18_445G57||||18_445G58||||18_445cWWtSW
28 HL_4PMI_0054PMI0.11281UNCGARev-Response-Element RNAC53||||24_444U54||||24_444C56||||24_444G57||||24_444G58||||24_444cWWtSW
29 HL_3J9W_0783J9W0.11911BA LSU rRNAC1736U1737C1739G1740G1741cWWtSW
30 HL_3J9W_0113J9W0.21391UNCG (H)AA SSU rRNAU427U428C430G431G432cWWntSW
31 HL_4V4Q_1144V4Q0.18471UNCG (H)CA SSU rRNAC419U420C422G423G424cWWtSW
32 HL_4V4Q_1344V4Q0.17821UNCG (H)CA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
33 HL_1I6U_0011I6U0.14521UNCGC16S RRNA FRAGMENTC16U17C19G20G21cWWtSW
34 HL_1NBS_0061NBS0.20421UNCGB RNase P class BC152U153C155G156G157cWWtSW
35 HL_5D5L_0125D5L0.20351DPreQ1-II riboswitchC60U61C63G64G65cWWtSW
36 HL_3J7P_0533J7P0.362215 LSU rRNAC4102C4103A4105G4106G4107cWWntSW
37 HL_1ZHO_0041ZHO0.18041HmRNAC15U16C18G19G20cWWtSW
38 HL_4QVI_0014QVI0.17451UNCG (H)B LSU rRNAC2143U2144C2146G2147G2148cWWtSW
39 HL_3J9W_0093J9W0.16951UNCG (H)AA SSU rRNAC350U351C353G354G355cWWntSW
40 HL_3J9W_0053J9W0.15241UNCG (H)AA SSU rRNAC217U218C220G221G222cWWntSW
41 HL_4V4Q_1124V4Q0.11301UNCG (H)CA SSU rRNAC342U343C345G346G347cWWtSW
42 HL_4PDB_0014PDB0.11151UNCGISELEX RNA aptamerC17U18C20G21G22cWWtSW
43 HL_4V9F_0444V9F0.08851UNCG0 LSU rRNAC1769U1770C1772G1773G1774cWWtSW
44 HL_4JF2_0034JF20.10211UNCGAPreQ1-II RiboswitchC60U61C63G64G65cWWtSW
45 HL_1FJG_0111FJG0.13231UNCG (H)A SSU rRNAC419U420C422G423G424cWWtSW
46 HL_1UN6_0031UN60.11221UNCGF5S RIBOSOMAL RNAC15U16C18G19G64cWWtSW
47 HL_4AY2_0014AY20.13771UNCGC5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3'C8U9C11G12G13cWWtSW
48 HL_1FJG_0091FJG0.15881UNCG (H)A SSU rRNAC342U343C345G346G347cWWtSW
49 HL_1FJG_0311FJG0.17941UNCG (H)A SSU rRNAC1449U1450C1452G1453G1454cWWtSW
50 HL_4BTS_1204BTS0.26651UNCG (H)DA SSU rRNAC405U406C408G409G410cWWntSWa
51 HL_5GAN_0025GAN0.26431V U4 snRNAA36U37C39G40U41cWWntSW
52 HL_5GAP_0025GAP0.24121V U4 snRNAA36U37C39G40U41cWWtSW
53 HL_3JCS_0353JCS0.28921UNCG (H)2 LSU rRNAG107U108C110G111C112cWWtSW
54 HL_4V9F_0054V9F0.547220 LSU rRNAC136U137C139G140G142cWWtSW
55 HL_1P6V_0011P6V0.68611UNCG variationB45-MERC26U27C29G30G31cWW
56 HL_4V8P_1744V8P0.58181F1 LSU rRNAC626U627A629G630G631cWWncWW
57 HL_2NUE_0012NUE0.63361GNRA relatedC46-MERC21G22A24A25G26cWWncSW
58 HL_4V88_1254V880.71551A5 LSU rRNAC543C544C546G547G548cWW
59 HL_2CZJ_0072CZJ0.86121UNCG variationHtmRNA (63-MER)G25U26C28G29C30cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUCGG34
CUACGG7
CCAAGG4
CUAAGG2
AUUCGU2
GUUCGC2
AAACAU1
CGCCAG1
UUUCGG1
CCGAGG1
CUCCGG1
CUUCGCG1
CGCAAG1
CCUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
UUCG39
UACG7
CAAG4
UAAG2
AACA1
GCCA1
CGAG1
UCCG1
UUCGC1
GCAA1
CUCG1

Release history

Release2.0
Date2017-04-24
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UNCG (H) (20)
  • (18)
  • UNCG (17)
  • UNCG variation (3)
  • GNRA related (1)
    • Basepair signature
    cWW-tSW-R
    Heat map statistics
    Min 0.04 | Avg 0.35 | Max 1.00
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