HL_1Z43_001

3D structure

PDB id

1Z43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 7S.S SRP RNA of M. jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGUAGG

Length

6 nucleotides

Bulged bases

1Z43|1|A|U|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z43_001 not in the Motif Atlas

Geometric match to HL_1L9A_001

Geometric discrepancy: 0.2389

The information below is about HL_1L9A_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1Z43|1|A|U|162
1Z43|1|A|G|163
1Z43|1|A|U|164
1Z43|1|A|A|165
1Z43|1|A|G|166
1Z43|1|A|G|167

Current chains

Chain A

RNA (101-MER)

Nearby chains