HL_1Z58_012

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

1Z58|1|2|G|399, 1Z58|1|2|U|400, 1Z58|1|2|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_012 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.3975

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1Z58|1|2|G|395
1Z58|1|2|U|396
1Z58|1|2|U|397
1Z58|1|2|C|398
1Z58|1|2|G|399
1Z58|1|2|U|400
1Z58|1|2|G|401
1Z58|1|2|A|402
1Z58|1|2|A|403
1Z58|1|2|A|404
1Z58|1|2|C|405

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains