1Z58 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1Z58_001 | 1/2/57:68 | Pseudoknot geometry | geometric HL_8VTW_013 NA | |
| HL_1Z58_002 | 1/2/85:95 | No text annotation | homologous HL_7A0S_002 HL_76590.1 | |
| HL_1Z58_080 | 1/2/121:126 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_1Z58_004 | 1/2/131:140 | No text annotation | ||
| HL_1Z58_005 | 1/2/146:151 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_1Z58_006 | 1/2/171:178 | No text annotation | homologous HL_4WF9_006 HL_48677.2 | |
| HL_1Z58_007 | 1/2/201:208 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_1Z58_008 | 1/2/223:229 | No text annotation | homologous HL_4WF9_008 HL_76371.3 | |
| HL_1Z58_009 | 1/2/316:323 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.4 | |
| HL_1Z58_010 | 1/2/330:334 | No text annotation | homologous HL_4WF9_011 HL_75660.9 | |
| HL_1Z58_011 | 1/2/338:346 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_1Z58_012 | 1/2/395:405 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_1Z58_013 | 1/2/423:430 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_1Z58_014 | 1/2/472:479 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.3 | |
| HL_1Z58_015 | 1/2/498:503 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_1Z58_016 | 1/2/552:560 | No text annotation | ||
| HL_1Z58_017 | 1/2/575:584 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.4 | |
| HL_1Z58_018 | 1/2/640:645 | GNRA | homologous HL_5J7L_152 NA | |
| HL_1Z58_019 | 1/2/651:658 | No text annotation | homologous HL_7A0S_021 HL_81314.1 | |
| HL_1Z58_020 | 1/2/724:733 | No text annotation | ||
| HL_1Z58_021 | 1/2/757:766 | No text annotation | homologous HL_4WF9_023 HL_50204.2 | |
| HL_1Z58_081 | 1/2/792:798 | UNCG variation | homologous HL_7A0S_023 HL_91813.1 | |
| HL_1Z58_082 | 1/2/839:844 | No text annotation | homologous HL_4WF9_025 HL_27530.2 | |
| HL_1Z58_025 | 1/2/966:973 | GNRA | homologous HL_7A0S_026 HL_34789.5 | |
| HL_1Z58_026 | 1/2/989:996 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_1Z58_083 | 1/2/1066:1115 | No text annotation | ||
| HL_1Z58_027 | 1/2/1075:1085 | No text annotation | ||
| HL_1Z58_028 | 1/2/1181:1193 | No text annotation | ||
| HL_1Z58_069 | 1/2/1235:1240 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_1Z58_030 | 1/2/1294:1302 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_1Z58_084 | 1/2/1332:1346 | No text annotation | ||
| HL_1Z58_031 | 1/2/1336:1344 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_1Z58_032 | 1/2/1376:1381 | GNRA | homologous HL_7RQB_035 NA | |
| HL_1Z58_033 | 1/2/1401:1412 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_1Z58_034 | 1/2/1463:1478 | No text annotation | ||
| HL_1Z58_071 | 1/2/1487:1536 | No text annotation | ||
| HL_1Z58_035 | 1/2/1503:1517 | No text annotation | geometric HL_4V9F_011 HL_75660.9 | |
| HL_1Z58_036 | 1/2/1628:1635 | No text annotation | homologous HL_4WF9_038 HL_28592.3 | |
| HL_1Z58_085 | 1/2/1647:1652 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_073 HL_49081.1 | |
| HL_1Z58_038 | 1/2/1708:1713 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_1Z58_039 | 1/2/1731:1735 | No text annotation | ||
| HL_1Z58_040 | 1/2/1743:1747 | No text annotation | homologous HL_4WF9_042 HL_80709.5 | |
| HL_1Z58_041 | 1/2/1767:1779 | No text annotation | homologous HL_7A0S_045 HL_50951.2 | |
| HL_1Z58_042 | 1/2/1797:1803 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_1Z58_043 | 1/2/1856:1861 | GNRA | homologous HL_7A0S_047 HL_34789.5 | |
| HL_1Z58_044 | 1/2/1893:1903 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1Z58_045 | 1/2/1929:1943 | No text annotation | ||
| HL_1Z58_046 | 1/2/2010:2019 | No text annotation | geometric HL_8VTW_049 NA | |
| HL_1Z58_048 | 1/2/2184:2201 | No text annotation | ||
| HL_1Z58_049 | 1/2/2227:2235 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_1Z58_050 | 1/2/2243:2255 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_1Z58_051 | 1/2/2280:2294 | No text annotation | ||
| HL_1Z58_052 | 1/2/2303:2310 | Pseudoknot geometry | geometric HL_7A0S_055 HL_52651.3 | |
| HL_1Z58_086 | 1/2/2329:2346 | No text annotation | ||
| HL_1Z58_053 | 1/2/2333:2342 | No text annotation | geometric HL_5J7L_212 NA | |
| HL_1Z58_054 | 1/2/2353:2358 | GNRA | homologous HL_5J7L_191 NA | |
| HL_1Z58_055 | 1/2/2383:2392 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_1Z58_077 | 1/2/2445:2463 | No text annotation | ||
| HL_1Z58_056 | 1/2/2450:2458 | No text annotation | homologous HL_4WF9_056 HL_52011.2 | |
| HL_1Z58_057 | 1/2/2507:2514 | GNRA variation | homologous HL_7A0S_060 HL_46665.3 | |
| HL_1Z58_058 | 1/2/2530:2536 | LSU A loop | homologous HL_4WF9_058 HL_48677.2 | |
| HL_1Z58_059 | 1/2/2573:2578 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_1Z58_078 | 1/2/2631:2647 | No text annotation | ||
| HL_1Z58_060 | 1/2/2637:2642 | GNRA | geometric HL_4V9F_009 HL_34789.5 | |
| HL_1Z58_061 | 1/2/2680:2685 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_1Z58_062 | 1/2/2725:2739 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_1Z58_063 | 1/2/2794:2802 | No text annotation | homologous HL_7A0S_067 HL_37889.2 | |
| HL_1Z58_064 | 1/2/2831:2836 | GNRA | homologous HL_7A0S_068 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1Z58_065 | tRNA D-loop | ||
| HL_1Z58_003 | No text annotation | ||
| HL_1Z58_066 | No text annotation | ||
| HL_1Z58_022 | UNCG variation | ||
| HL_1Z58_067 | No text annotation | ||
| HL_1Z58_023 | No text annotation | ||
| HL_1Z58_024 | No text annotation | ||
| HL_1Z58_068 | No text annotation | ||
| HL_1Z58_029 | tRNA anticodon loop | ||
| HL_1Z58_070 | No text annotation | ||
| HL_1Z58_072 | GNRA with extra cWW | ||
| HL_1Z58_037 | No text annotation | ||
| HL_1Z58_073 | No text annotation | ||
| HL_1Z58_047 | No text annotation | ||
| HL_1Z58_074 | No text annotation | ||
| HL_1Z58_075 | No text annotation | ||
| HL_1Z58_076 | No text annotation | ||
| HL_1Z58_079 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1Z58_150 | 1/2/24:30, 1/2/520:526 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.2 | |
| IL_1Z58_120 | 1/2/32:35, 1/2/457:484 | No text annotation | ||
| IL_1Z58_006 | 1/2/36:37, 1/2/454:456 | Single bulged A | geometric IL_1NBS_005 IL_14190.3 | |
| IL_1Z58_121 | 1/2/55:80, 1/2/103:112 | No text annotation | ||
| IL_1Z58_009 | 1/2/80:84, 1/2/96:103 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_1Z58_122 | 1/2/160:161, 1/2/189:191 | Single stack bend | homologous IL_7A0S_005 IL_15011.4 | |
| IL_1Z58_151 | 1/2/165:171, 1/2/178:185 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.4 | |
| IL_1Z58_124 | 1/2/212:222, 1/2/230:239 | No text annotation | ||
| IL_1Z58_012 | 1/2/215:222, 1/2/230:236 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_62167.4 | |
| IL_1Z58_013 | 1/2/298:307, 1/2/353:364 | No text annotation | ||
| IL_1Z58_015 | 1/2/573:575, 1/2/584:586 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_71625.4 | |
| IL_1Z58_016 | 1/2/600:602, 1/2/678:679 | Single bulged A | homologous IL_7A0S_012 IL_14190.3 | |
| IL_1Z58_017 | 1/2/685:687, 1/2/819:821 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.5 | |
| IL_1Z58_152 | 1/2/685:691, 1/2/812:821 | No text annotation | ||
| IL_1Z58_018 | 1/2/687:691, 1/2/812:819 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_1Z58_019 | 1/2/714:716, 1/2/741:744 | Isolated cWH basepair | geometric IL_3R1D_002 IL_10892.3 | |
| IL_1Z58_020 | 1/2/716:722, 1/2/735:741 | No text annotation | ||
| IL_1Z58_021 | 1/2/750:754, 1/2/769:772 | No text annotation | ||
| IL_1Z58_153 | 1/2/751:756, 1/2/767:771 | No text annotation | ||
| IL_1Z58_022 | 1/2/754:756, 1/2/767:769 | Isolated non-canonical cWW pair | homologous IL_7A0S_020 IL_01003.5 | |
| IL_1Z58_023 | 1/2/850:851, 1/2/951:953 | Single stack bend | homologous IL_4WF9_028 IL_15011.4 | |
| IL_1Z58_026 | 1/2/857:861, 1/2/942:945 | No text annotation | ||
| IL_1Z58_154 | 1/2/863:864, 1/2/938:940 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_1Z58_130 | 1/2/864:866, 1/2/936:938 | Isolated non-canonical cWW pair | homologous IL_7A0S_026 IL_01003.5 | |
| IL_1Z58_028 | 1/2/870:875, 1/2/927:932 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_1Z58_155 | 1/2/871:876, 1/2/925:931 | No text annotation | ||
| IL_1Z58_029 | 1/2/875:877, 1/2/924:927 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.5 | |
| IL_1Z58_030 | 1/2/877:881, 1/2/921:924 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_1Z58_031 | 1/2/883:885, 1/2/917:919 | Isolated non-canonical cWW pair | homologous IL_7A0S_030 IL_42997.6 | |
| IL_1Z58_034 | 1/2/963:965, 1/2/974:976 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.5 | |
| IL_1Z58_133 | 1/2/1005:1007, 1/2/1170:1171 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_1Z58_036 | 1/2/1009:1013, 1/2/1164:1168 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_1Z58_037 | 1/2/1015:1022, 1/2/1161:1162 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.1 | |
| IL_1Z58_038 | 1/2/1022:1024, 1/2/1160:1161 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_1Z58_156 | 1/2/1029:1035, 1/2/1150:1155 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_1Z58_119 | 1/2/1035:1041, 1/2/1135:1150 | No text annotation | geometric IL_7A0S_037 IL_50715.4 | |
| IL_1Z58_040 | 1/2/1042:1046, 1/2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_1Z58_135 | 1/2/1052:1064, 1/2/1117:1125 | No text annotation | ||
| IL_1Z58_044 | 1/2/1054:1064, 1/2/1117:1123 | No text annotation | ||
| IL_1Z58_157 | 1/2/1210:1212, 1/2/1260:1263 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.6 | |
| IL_1Z58_047 | 1/2/1218:1220, 1/2/1252:1254 | Isolated non-canonical cWW pair | homologous IL_7A0S_042 IL_01003.5 | |
| IL_1Z58_136 | 1/2/1218:1228, 1/2/1247:1254 | No text annotation | ||
| IL_1Z58_048 | 1/2/1221:1228, 1/2/1247:1251 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_1Z58_049 | 1/2/1232:1234, 1/2/1241:1243 | Intercalated cWW | homologous IL_7A0S_044 IL_53541.1 | |
| IL_1Z58_052 | 1/2/1332:1336, 1/2/1344:1346 | C-loop | geometric IL_7A0S_047 IL_06671.2 | |
| IL_1Z58_158 | 1/2/1357:1363, 1/2/1394:1416 | No text annotation | ||
| IL_1Z58_053 | 1/2/1364:1368, 1/2/1389:1393 | UAA/GAN | homologous IL_4WF9_051 IL_89021.4 | |
| IL_1Z58_054 | 1/2/1370:1374, 1/2/1383:1387 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_1Z58_057 | 1/2/1426:1430, 1/2/1598:1605 | Kink-turn | homologous IL_7A0S_050 IL_28245.1 | |
| IL_1Z58_058 | 1/2/1431:1438, 1/2/1590:1597 | No text annotation | ||
| IL_1Z58_138 | 1/2/1438:1443, 1/2/1580:1590 | No text annotation | ||
| IL_1Z58_159 | 1/2/1447:1449, 1/2/1573:1576 | Isolated non-canonical cWW pair | homologous IL_7A0S_052 IL_38565.3 | |
| IL_1Z58_139 | 1/2/1451:1454, 1/2/1567:1571 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_1Z58_063 | 1/2/1483:1487, 1/2/1536:1539 | No text annotation | ||
| IL_1Z58_065 | 1/2/1668:1673, 1/2/1987:1989 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_1Z58_066 | 1/2/1680:1682, 1/2/1978:1980 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.2 | |
| IL_1Z58_067 | 1/2/1683:1686, 1/2/1976:1977 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.3 | |
| IL_1Z58_069 | 1/2/1703:1708, 1/2/1713:1719 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_1Z58_160 | 1/2/1761:1763, 1/2/1962:1965 | Isolated non-canonical cWW pair | geometric IL_7QR8_008 NA | |
| IL_1Z58_075 | 1/2/1789:1795, 1/2/1805:1813 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_1Z58_076 | 1/2/1828:1832, 1/2/1885:1887 | No text annotation | ||
| IL_1Z58_077 | 1/2/1833:1835, 1/2/1880:1884 | Single bulged G, near cWW | geometric IL_5J7L_008 NA | |
| IL_1Z58_161 | 1/2/1833:1841, 1/2/1876:1884 | No text annotation | ||
| IL_1Z58_078 | 1/2/1838:1842, 1/2/1875:1877 | No text annotation | ||
| IL_1Z58_079 | 1/2/1842:1848, 1/2/1869:1875 | No text annotation | ||
| IL_1Z58_141 | 1/2/1843:1852, 1/2/1865:1874 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_1Z58_080 | 1/2/1848:1852, 1/2/1865:1869 | Triple sheared | homologous IL_7A0S_070 IL_15190.3 | |
| IL_1Z58_082 | 1/2/1916:1917, 1/2/1947:1950 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_1Z58_083 | 1/2/1917:1928, 1/2/1944:1947 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_1Z58_085 | 1/2/2033:2035, 1/2/2596:2597 | Major groove platform | homologous IL_7A0S_073 IL_48076.9 | |
| IL_1Z58_086 | 1/2/2036:2040, 1/2/2590:2595 | No text annotation | ||
| IL_1Z58_087 | 1/2/2050:2052, 1/2/2421:2422 | Single bulged U | homologous IL_4WF9_080 IL_97561.6 | |
| IL_1Z58_088 | 1/2/2053:2054, 1/2/2417:2420 | Minor groove platform | homologous IL_4WF9_081 IL_34520.4 | |
| IL_1Z58_090 | 1/2/2064:2066, 1/2/2215:2218 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.3 | |
| IL_1Z58_091 | 1/2/2068:2070, 1/2/2211:2213 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.4 | |
| IL_1Z58_162 | 1/2/2073:2080, 1/2/2175:2208 | No text annotation | ||
| IL_1Z58_094 | 1/2/2328:2332, 1/2/2343:2347 | Double sheared with near cWW | geometric IL_7A0S_056 IL_87767.3 | |
| IL_1Z58_163 | 1/2/2380:2382, 1/2/2393:2394 | No text annotation | ||
| IL_1Z58_097 | 1/2/2432:2433, 1/2/2477:2479 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_1Z58_146 | 1/2/2432:2434, 1/2/2475:2479 | No text annotation | homologous IL_5J7L_335 NA | |
| IL_1Z58_098 | 1/2/2433:2434, 1/2/2475:2477 | Major groove platform | geometric IL_4WF9_090 IL_48076.9 | |
| IL_1Z58_099 | 1/2/2436:2440, 1/2/2468:2473 | No text annotation | ||
| IL_1Z58_100 | 1/2/2445:2449, 1/2/2459:2463 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_1Z58_101 | 1/2/2486:2487, 1/2/2559:2561 | Major groove platform | homologous IL_4WF9_094 IL_46637.3 | |
| IL_1Z58_102 | 1/2/2489:2491, 1/2/2553:2557 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.5 | |
| IL_1Z58_103 | 1/2/2491:2492, 1/2/2550:2553 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_1Z58_104 | 1/2/2501:2502, 1/2/2519:2522 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_1Z58_107 | 1/2/2570:2571, 1/2/2580:2582 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_1Z58_164 | 1/2/2615:2620, 1/2/2753:2762 | No text annotation | ||
| IL_1Z58_109 | 1/2/2631:2637, 1/2/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_1Z58_110 | 1/2/2659:2664, 1/2/2704:2707 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_1Z58_111 | 1/2/2666:2671, 1/2/2697:2702 | No text annotation | ||
| IL_1Z58_112 | 1/2/2674:2675, 1/2/2690:2694 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_1Z58_113 | 1/2/2717:2722, 1/2/2742:2747 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_1Z58_116 | 1/2/2813:2814, 1/2/2853:2855 | No text annotation | ||
| IL_1Z58_165 | 1/2/2818:2820, 1/2/2846:2849 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_1Z58_118 | 1/2/2822:2827, 1/2/2840:2844 | No text annotation | homologous IL_7A0S_101 IL_48489.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1Z58_001 | No text annotation | ||
| IL_1Z58_002 | Isolated cWH basepair | ||
| IL_1Z58_003 | No text annotation | ||
| IL_1Z58_004 | Isolated non-canonical cWW pair | ||
| IL_1Z58_005 | No text annotation | ||
| IL_1Z58_007 | No text annotation | ||
| IL_1Z58_008 | Isolated non-canonical cWW contact | ||
| IL_1Z58_123 | No text annotation | ||
| IL_1Z58_010 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_1Z58_011 | No text annotation | ||
| IL_1Z58_014 | Isolated non-canonical cWW pair | ||
| IL_1Z58_125 | Isolated non-canonical cWW pair | ||
| IL_1Z58_126 | No text annotation | ||
| IL_1Z58_127 | No text annotation | ||
| IL_1Z58_024 | Isolated cWH basepair | ||
| IL_1Z58_025 | Isolated non-canonical cWW pair | ||
| IL_1Z58_128 | No text annotation | ||
| IL_1Z58_129 | No text annotation | ||
| IL_1Z58_027 | No text annotation | ||
| IL_1Z58_131 | No text annotation | ||
| IL_1Z58_132 | No text annotation | ||
| IL_1Z58_032 | Isolated cWH basepair | ||
| IL_1Z58_033 | Isolated non-canonical cWW pair | ||
| IL_1Z58_035 | Isolated non-canonical cWW pair | ||
| IL_1Z58_134 | Tandem non-canonical cWW pairs | ||
| IL_1Z58_039 | No text annotation | ||
| IL_1Z58_041 | No text annotation | ||
| IL_1Z58_042 | Isolated non-canonical cWW pair | ||
| IL_1Z58_043 | Isolated non-canonical cWW pair | ||
| IL_1Z58_045 | No text annotation | ||
| IL_1Z58_046 | Tandem non-canonical cWW pairs | ||
| IL_1Z58_050 | Isolated non-canonical cWW pair | ||
| IL_1Z58_051 | Isolated non-canonical cWW pair | ||
| IL_1Z58_137 | No text annotation | ||
| IL_1Z58_055 | Isolated non-canonical cWW pair | ||
| IL_1Z58_056 | Isolated non-canonical cWW pair | ||
| IL_1Z58_059 | Isolated non-canonical cWW pair | ||
| IL_1Z58_060 | No text annotation | ||
| IL_1Z58_061 | No text annotation | ||
| IL_1Z58_062 | Isolated non-canonical cWW pair | ||
| IL_1Z58_064 | Tandem non-canonical cWW pairs | ||
| IL_1Z58_068 | Isolated cWH basepair | ||
| IL_1Z58_070 | Isolated non-canonical cWW pair | ||
| IL_1Z58_071 | Isolated non-canonical cWW pair | ||
| IL_1Z58_072 | Isolated non-canonical cWW pair | ||
| IL_1Z58_073 | Tandem non-canonical cWW pairs | ||
| IL_1Z58_074 | Isolated non-canonical cWW pair | ||
| IL_1Z58_140 | No text annotation | ||
| IL_1Z58_081 | Isolated non-canonical cWW pair | ||
| IL_1Z58_142 | No text annotation | ||
| IL_1Z58_084 | Isolated non-canonical cWW pair | ||
| IL_1Z58_143 | No text annotation | ||
| IL_1Z58_144 | No text annotation | ||
| IL_1Z58_089 | Isolated non-canonical cWW pair | ||
| IL_1Z58_145 | No text annotation | ||
| IL_1Z58_092 | No text annotation | ||
| IL_1Z58_093 | Isolated cWH basepair | ||
| IL_1Z58_095 | No text annotation | ||
| IL_1Z58_096 | Major groove platform with intercalation | ||
| IL_1Z58_105 | No text annotation | ||
| IL_1Z58_106 | Isolated non-canonical cWW pair | ||
| IL_1Z58_147 | Partly complementary | ||
| IL_1Z58_108 | No text annotation | ||
| IL_1Z58_148 | No text annotation | ||
| IL_1Z58_114 | Isolated cWS basepair | ||
| IL_1Z58_115 | Isolated non-canonical cWW pair | ||
| IL_1Z58_117 | No text annotation | ||
| IL_1Z58_149 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1Z58_010 | 1/2/30:31, 1/2/485:495, 1/2/506:520 | No text annotation | homologous J3_7A0S_015 J3_17917.2 | |
| J3_1Z58_020 | 1/2/55:56, 1/2/69:80, 1/2/103:112 | No text annotation | ||
| J3_1Z58_012 | 1/2/298:312, 1/2/327:336, 1/2/348:364 | No text annotation | ||
| J3_1Z58_013 | 1/2/611:639, 1/2/646:650, 1/2/659:669 | No text annotation | ||
| J3_1Z58_021 | 1/2/695:702, 1/2/786:790, 1/2/800:808 | No text annotation | ||
| J3_1Z58_002 | 1/2/710:713, 1/2/745:749, 1/2/773:778 | No text annotation | geometric J3_5TBW_005 NA | |
| J3_1Z58_022 | 1/2/710:722, 1/2/735:749, 1/2/773:778 | No text annotation | ||
| J3_1Z58_003 | 1/2/1311:1316, 1/2/1641:1643, 1/2/1656:1659 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_1Z58_023 | 1/2/1319:1322, 1/2/1621:1627, 1/2/1636:1638 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_1Z58_005 | 1/2/1458:1461, 1/2/1480:1483, 1/2/1539:1563 | No text annotation | ||
| J3_1Z58_024 | 1/2/1458:1460, 1/2/1481:1487, 1/2/1536:1563 | No text annotation | ||
| J3_1Z58_006 | 1/2/2073:2076, 1/2/2179:2183, 1/2/2202:2208 | No text annotation | ||
| J3_1Z58_025 | 1/2/2274:2278, 1/2/2296:2302, 1/2/2311:2316 | No text annotation | ||
| J3_1Z58_026 | 1/2/2496:2499, 1/2/2524:2526, 1/2/2540:2546 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_1Z58_009 | 1/2/2789:2790, 1/2/2806:2811, 1/2/2857:2861 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_1Z58_027 | 1/2/2789:2790, 1/2/2806:2814, 1/2/2853:2861 | No text annotation | ||
| J4_1Z58_001 | 1/2/1283:1289, 1/2/1307:1308, 1/2/1662:1665, 1/2/1992:1993 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_1Z58_007 | 1/2/1323:1327, 1/2/1351:1356, 1/2/1417:1419, 1/2/1612:1620 | No text annotation | ||
| J4_1Z58_004 | 1/2/1763:1767, 1/2/1779:1783, 1/2/1819:1822, 1/2/1958:1962 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_1Z58_008 | 1/2/1825:1832, 1/2/1885:1892, 1/2/1904:1917, 1/2/1947:1955 | No text annotation | ||
| J4_1Z58_006 | 1/2/2622:2625, 1/2/2653:2655, 1/2/2711:2716, 1/2/2748:2751 | No text annotation | homologous J4_7A0S_010 J4_54165.1 | |
| J5_1Z58_005 | 1/2/46:53, 1/2/114:119, 1/2/128:129, 1/2/142:144, 1/2/153:155 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_1Z58_002 | 1/2/593:598, 1/2/681:684, 1/2/822:825, 1/2/1209:1210, 1/2/1263:1269 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_1Z58_006 | 1/2/1683:1699, 1/2/1723:1724, 1/2/1742:1743, 1/2/1747:1755, 1/2/1971:1977 | No text annotation | ||
| J5_1Z58_007 | 1/2/2037:2047, 1/2/2425:2432, 1/2/2479:2485, 1/2/2562:2567, 1/2/2585:2594 | No text annotation | ||
| J6_1Z58_001 | 1/2/830:835, 1/2/848:849, 1/2/954:957, 1/2/982:988, 1/2/997:1002, 1/2/1174:1204 | No text annotation | ||
| J8_1Z58_002 | 1/2/2057:2060, 1/2/2222:2225, 1/2/2237:2238, 1/2/2260:2268, 1/2/2322:2326, 1/2/2349:2351, 1/2/2360:2374, 1/2/2400:2414 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1Z58_011 | No text annotation | ||
| J3_1Z58_001 | No text annotation | ||
| J3_1Z58_014 | No text annotation | ||
| J3_1Z58_015 | No text annotation | ||
| J3_1Z58_016 | No text annotation | ||
| J3_1Z58_004 | No text annotation | ||
| J3_1Z58_017 | No text annotation | ||
| J3_1Z58_007 | No text annotation | ||
| J3_1Z58_008 | No text annotation | ||
| J3_1Z58_018 | No text annotation | ||
| J3_1Z58_019 | No text annotation | ||
| J4_1Z58_002 | No text annotation | ||
| J4_1Z58_003 | No text annotation | ||
| J4_1Z58_005 | No text annotation | ||
| J5_1Z58_001 | No text annotation | ||
| J5_1Z58_003 | No text annotation | ||
| J5_1Z58_004 | No text annotation | ||
| J8_1Z58_001 | No text annotation |
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