HL_1Z58_014

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_014 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3635

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1Z58|1|2|C|472
1Z58|1|2|C|473
1Z58|1|2|G|474
1Z58|1|2|U|475
1Z58|1|2|G|476
1Z58|1|2|A|477
1Z58|1|2|G|478
1Z58|1|2|G|479

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains