HL_1Z58_017

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1Z58|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.2295

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1Z58|1|2|U|575
1Z58|1|2|A|576
1Z58|1|2|U|577
1Z58|1|2|U|578
1Z58|1|2|G|579
1Z58|1|2|A|580
1Z58|1|2|A|581
1Z58|1|2|G|582
1Z58|1|2|C|583
1Z58|1|2|A|584

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains