HL_1Z58_029

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCGGAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_029 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3974

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1Z58|1|2|C|1234
1Z58|1|2|C|1235
1Z58|1|2|G|1236
1Z58|1|2|G|1237
1Z58|1|2|A|1238
1Z58|1|2|A|1239
1Z58|1|2|G|1240
1Z58|1|2|G|1241

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains