HL_1Z58_035

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUCAGAAAAUCUAC

Length

15 nucleotides

Bulged bases

1Z58|1|2|C|1506, 1Z58|1|2|A|1507, 1Z58|1|2|A|1509, 1Z58|1|2|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_035 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.3082

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1Z58|1|2|G|1503
1Z58|1|2|G|1504
1Z58|1|2|U|1505
1Z58|1|2|C|1506
1Z58|1|2|A|1507
1Z58|1|2|G|1508
1Z58|1|2|A|1509
1Z58|1|2|A|1510
1Z58|1|2|A|1511
1Z58|1|2|A|1512
1Z58|1|2|U|1513
1Z58|1|2|C|1514
1Z58|1|2|U|1515
1Z58|1|2|A|1516
1Z58|1|2|C|1517

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains