HL_1Z58_049

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1Z58|1|2|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_049 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1512

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1Z58|1|2|C|2227
1Z58|1|2|U|2228
1Z58|1|2|G|2229
1Z58|1|2|G|2230
1Z58|1|2|G|2231
1Z58|1|2|G|2232
1Z58|1|2|C|2233
1Z58|1|2|G|2234
1Z58|1|2|G|2235

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains