HL_1Z58_066

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

ACCUUAUGCGU

Length

11 nucleotides

Bulged bases

1Z58|1|2|C|553, 1Z58|1|2|U|554, 1Z58|1|2|U|555, 1Z58|1|2|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_066 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3422

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

1Z58|1|2|A|551
1Z58|1|2|C|552
1Z58|1|2|C|553
1Z58|1|2|U|554
1Z58|1|2|U|555
1Z58|1|2|A|556
1Z58|1|2|U|557
1Z58|1|2|G|558
1Z58|1|2|C|559
1Z58|1|2|G|560
1Z58|1|2|U|561

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains