HL_1Z58_072

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGUCAAUGCA

Length

10 nucleotides

Bulged bases

1Z58|1|2|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_072 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.481

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1Z58|1|2|U|1645
1Z58|1|2|G|1646
1Z58|1|2|U|1647
1Z58|1|2|C|1648
1Z58|1|2|A|1649
1Z58|1|2|A|1650
1Z58|1|2|U|1651
1Z58|1|2|G|1652
1Z58|1|2|C|1653
1Z58|1|2|A|1654

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains