HL_1ZCI_001
3D structure
- PDB id
- 1ZCI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HIV-1 DIS RNA subtype F- monoclinic form
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.65 Å
Loop
- Sequence
- GAAGUGCACAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_12078.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
1ZCI|1|A|G|7
1ZCI|1|A|A|8
1ZCI|1|A|A|9
1ZCI|1|A|G|10
1ZCI|1|A|U|11
1ZCI|1|A|G|12
1ZCI|1|A|C|13
1ZCI|1|A|A|14
1ZCI|1|A|C|15
1ZCI|1|A|A|16
1ZCI|1|A|C|17
Current chains
- Chain A
- 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
Nearby chains
- Chain B
- 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
- Chain C
- 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
Coloring options: